CRM/SharePoint integration can only work with a site at the root. It wants to create the Document Libraries/Folders for you. When you setup your connection to SharePoint, you can specify everything to be based on an entity. For example, you could base your documents on Account, then any Leads would be created as a subfolder under that Account. That would give you a single document folder. You can do this under Document Management Settings in CRM.
↧